Dernière mise à jour : mars 2025
Arredondo, A., Corujo, J., Noûs, C., Boitard, S., Chikhi, L., Mazet, O. (2025). Exact
calculation of the expected SFS in structured populations. Theoretical Population Biology.
https://doi.org/10.1016/j.tpb.2025.03.003
Luiselli, J., Banse, P., Mazet, O., Lartillot,
N., Beslon, G. (2025). Structural
mutations set an equilibrium non-coding
genome fraction. Soumis.
https://www.biorxiv.org/content/10.1101/2025.02.03.636187v1
Steux, C., Couloigner, C., Arredondo, A.,
Rodriguez, W., Mazet, O., Tournebize, R., Chikhi, L. (2025). On the demographic history of chimpanzees and some consequences of
integrating population structure in chimpanzees and other great apes. Accepté à Human Population Genetics and Genomics.
https://www.biorxiv.org/content/10.1101/2024.06.14.599042v1
Jouniaux, A., Arredondo, A., Boitard, S., Chikhi, L., Mazet, O. (2024). Extending the IICR to
complex non-stationary structured models. En
révision.
https://www.biorxiv.org/content/10.1101/2024.10.21.619462v1
Chikhi, L., Rodriguez, W., Paris, C., Ha-Shan, M., Jouniaux,
A., Arredondo, A., Noûs, C., Grusea,
S., Corujo, J., Lourenço, I., Boitard, S., Mazet, O. (2024). Extending the IICR to
multiple genomes helps clarify some limitations of demographic inferential
methods. En révision.
https://www.biorxiv.org/content/10.1101/2024.08.16.608273v1
Mazet, O., Noûs, C. (2023).
Population genetics: coalescence rate and demographic parameters inference, PCI Math. & Comp. Bio., Peer
Community Journal, Volume 3, article n° e53.
https://peercommunityjournal.org/articles/10.24072/pcjournal.285/
Boitard, S., Arredondo, A., Chikhi, L., Mazet,
O (2022). Heterogeneity in
effective size across the genome: effects on the Inverse Instantaneous
Coalescence Rate (IICR) and implications for demographic inference under linked
selection, Genetics, vol. 220, issue 3, march 2022, iyac008, https://doi.org/10.1093/genetics/iyac008
Teixeira, H., Salmona, J., Arredondo, A.,
Mourato, B., Manzi, S., Rakotondravony, R., Mazet, O., Chikhi, L., Metzger, J., Radespiel, U. (2021).
Impact of model assumptions on demographic inferences – the case study of two
sympatric mouse lemurs in northwestern Madagascar. BMC Ecol Evo 21, 197 (2021). https://doi.org/10.1186/s12862-021-01929-z
Arredondo, A., Mourato, B., Nguyen, K., Boitard,
S., Rodriguez, W., Noûs, C., Mazet, O., Chikhi, L. (2021).
Inferring number of populations and changes in connectivity under the n-island
model. Heredity (2021). https://www.nature.com/articles/s41437-021-00426-9
Grusea, S., Rodríguez, W., Pinchon, D., Chikhi, L., Boitard, S., & Mazet,
O. (2019). Coalescence times for
three genes provide sufficient information to distinguish population structure
from population size changes. J. Math.
Biol. 78, 189–224 (2019).
https://doi.org/10.1007/s00285-018-1272-4
Rodríguez, W., Mazet, O., Grusea, S., Arredondo, A., Corujo, J., Boitard,
S., & Chikhi, L. (2018). The
IICR and the non-stationary structured coalescent: demographic inference with
arbitrary changes in population structure. Heredity,
vol. 121, pp 663–678 (2018).
https://www.nature.com/articles/s41437-018-0148-0
Chikhi, L., Rodríguez, W., Grusea,
S., Santos, P., Boitard, S., & Mazet, O. (2018). The IICR (inverse instantaneous coalescence rate) as a
summary of genomic diversity: insights into demographic inference and model
choice. Heredity, vol. 120, pp 13-24.
https://www.nature.com/articles/s41437-017-0005-6
Mazet, O., Rodriguez, W., Grusea, S., Boitard, S., & Chikhi,
L. (2016). On the importance of being structured: instantaneous coalescence rates
and human evolution—lessons for ancestral population size inference?.
Heredity, vol. 116 (4),
pp 362-371.
https://www.nature.com/articles/hdy2015104
Mazet, O., Rodríguez, W., &
Chikhi, L. (2015). Demographic
inference using genetic data from a single individual: Separating population
size variation from population structure. Theoretical population biology,
104, 46-58. https://doi.org/10.1016/j.tpb.2015.06.003
Knibbe, C., Coulon, A., Mazet, O.,
Fayard, J. M., & Beslon, G. (2007). A long-term evolutionary pressure on the amount of noncoding
DNA. Molecular biology and evolution, 24(10), 2344-2353. https://academic.oup.com/mbe/article/24/10/2344/1074262
Knibbe, C., Mazet, O., Chaudier, F., Fayard, J. M., & Beslon,
G. (2007). Evolutionary coupling
between the deleteriousness of gene mutations and the amount of non-coding
sequences. Journal of Theoretical Biology, 244(4), 621-630.
https://www.sciencedirect.com/science/article/pii/S0022519306004061
Coulon, A.,
Soula, H., Mazet, O., Gandrillon, O., & Beslon, G. (2007). Modélisation cellulaire pour l'émergence de structures
multiprotéiques auto-organisées. Technique et
Science Informatiques, 26(1-2), 123-148.
Soula, H.,
Beslon, G., & Mazet, O. (2006). Spontaneous
dynamics of asymmetric random recurrent spiking neural networks. Neural Computation, 18(1), 60-79.
https://direct.mit.edu/neco/article-abstract/18/1/60/7018
Cessac, B., Mazet, O., Samuelides,
M., & Soula, H. (2005). Mean field theory for random recurrent spiking neural networks. In NOLTA
(Vol. 5, pp. 18-21).
https://www.academia.edu/download/39235008/09e4150c231ae8e132000000.pdf
Alòs, E., Mazet, O., & Nualart,
D. (2001). Stochastic calculus with
respect to Gaussian processes. Annals of probability, 766-801. https://projecteuclid.org/journals/annals-of-probability/volume-29/issue-2/Stochastic-Calculus-with-Respect-to-Gaussian-Processes/10.1214/aop/1008956692.short
Alòs, E., Mazet, O., & Nualart,
D. (2000). Stochastic calculus with
respect to fractional Brownian motion with Hurst parameter lesser than 1/2. Stochastic
processes and their applications, 86(1), 121-139.
https://www.sciencedirect.com/science/article/pii/S0304414999000897
Bakry, D., & Mazet, O. (2003). Characterization of Markov
semigroups on ℝ associated to some families of orthogonal polynomials. In Séminaire de Probabilités
XXXVII (pp. 60-80). Springer Berlin Heidelberg. https://link.springer.com/chapter/10.1007/978-3-540-40004-2_2
Mazet, O. (2002). A characterization of
Markov property for semigroups with invariant measure. Potential Analysis,
16(3), 279-287.
https://link.springer.com/article/10.1023/A:1014027914329
Mazet, O. (1998). Semigroupes de Markov associés à une famille de
polynômes orthogonaux (Doctoral dissertation).
Mazet, O. (1997).
Classification des Semi-Groupes de diffusion sur IR associés à une famille de
polynômes orthogonaux. In Séminaire de Probabilités XXXI (pp. 40-53).
Springer Berlin Heidelberg. http://www.numdam.org/item/SPS_1997__31__40_0.pdf
Mazet,
O.
(1996). Une caractérisation des
générateurs de semi-groupes markoviens. Comptes rendus de l'Académie des
sciences. Série 1, Mathématique, 322(2), 165-168.