Dernière mise à jour : juin 2023
Arredondo, A.,
Corujo, J., Noûs, C., Boitard, S., Chikhi, L., Mazet, O. (2023). Exact
calculation of the expected SFS in structured populations. Soumis.
https://biorxiv.org/cgi/content/short/2023.05.10.540112v1
Mazet, O., Noûs, C. (2023). Population genetics: coalescence rate and demographic
parameters inference, PCI Math. & Comp.
Bio., Peer Community Journal, Volume 3, article n° e53. doi :
10.24072/pcjournal.285. https://peercommunityjournal.org/articles/10.24072/pcjournal.285/
Boitard, S.,
Arredondo, A., Chikhi, L., Mazet, O (2022). Heterogeneity in effective size
across the genome: effects on the Inverse Instantaneous Coalescence Rate (IICR)
and implications for demographic inference under linked selection, Genetics,
vol. 220, issue 3, march 2022, iyac008, https://doi.org/10.1093/genetics/iyac008
Teixeira, H., Salmona, J., Arredondo, A., Mourato, B.,
Manzi, S., Rakotondravony, R., Mazet, O.,
Chikhi, L., Metzger, J., Radespiel, U. (2021).
Impact of model assumptions on demographic inferences – the case study of two
sympatric mouse lemurs in northwestern Madagascar. BMC Ecol Evo
21, 197 (2021). https://doi.org/10.1186/s12862-021-01929-z
Arredondo, A., Mourato, B., Nguyen, K., Boitard, S.,
Rodriguez, W., Noûs, C., Mazet, O.,
Chikhi, L. (2021). Inferring number
of populations and changes in connectivity under the n-island model. Heredity (2021). https://www.nature.com/articles/s41437-021-00426-9
Rodríguez, W., Mazet,
O., Grusea, S., Arredondo, A., Corujo, J., Boitard, S., & Chikhi, L. (2018). The IICR and the non-stationary
structured coalescent: demographic inference with arbitrary changes in
population structure. Heredity, vol. 121, pp 663–678 (2018). https://www.nature.com/articles/s41437-018-0148-0
Grusea, S., Rodríguez,
W., Pinchon, D., Chikhi, L., Boitard, S., & Mazet, O. (2018).
Coalescence times for three genes provide sufficient information to distinguish
population structure from population size changes. J.
Math. Biol. (2018).
https://doi.org/10.1007/s00285-018-1272-4
Chikhi,
L., Rodríguez, W., Grusea, S., Santos, P., Boitard, S., & Mazet, O. (2018). The IICR (inverse
instantaneous coalescence rate) as a summary of genomic diversity: insights
into demographic inference and model choice. Heredity, vol. 120, pp
13-24. https://www.nature.com/articles/s41437-017-0005-6
Mazet, O., Rodriguez, W.,
Grusea, S., Boitard, S., & Chikhi, L. (2016).
On the importance of being structured: instantaneous
coalescence rates and human evolution—lessons for ancestral population size
inference?. Heredity, vol. 116 (4),
pp 362-371. https://www.nature.com/articles/hdy2015104
Mazet, O.,
Rodríguez, W., & Chikhi, L. (2015).
Demographic inference using genetic data from a single individual: Separating
population size variation from population structure. Theoretical population
biology, 104, 46-58. https://doi.org/10.1016/j.tpb.2015.06.003
Knibbe, C., Coulon, A., Mazet, O., Fayard, J. M., & Beslon,
G. (2007). A long-term evolutionary
pressure on the amount of noncoding DNA. Molecular biology and evolution,
24(10), 2344-2353. https://academic.oup.com/mbe/article/24/10/2344/1074262
Knibbe, C., Mazet, O., Chaudier, F., Fayard, J. M.,
& Beslon, G. (2007).
Evolutionary coupling between the deleteriousness of gene mutations and the
amount of non-coding sequences. Journal of Theoretical Biology, 244(4),
621-630. https://www.sciencedirect.com/science/article/pii/S0022519306004061
Coulon, A.,
Soula, H., Mazet, O., Gandrillon,
O., & Beslon, G. (2007).
Modélisation cellulaire pour l'émergence de structures multiprotéiques
auto-organisées. Technique et Science Informatiques, 26(1-2),
123-148. https://www.academia.edu/download/42658617/Modlisation_cellulaire_pour_lmergence_d20160213-6875-dmg7yb.pdf
Soula, H.,
Beslon, G., & Mazet, O. (2006). Spontaneous
dynamics of asymmetric random recurrent spiking neural networks. Neural Computation, 18(1), 60-79. https://direct.mit.edu/neco/article-abstract/18/1/60/7018
Cessac, B., Mazet, O., Samuelides, M., & Soula,
H. (2005). Mean field
theory for random recurrent spiking neural networks. In NOLTA (Vol. 5,
pp. 18-21). https://www.academia.edu/download/39235008/09e4150c231ae8e132000000.pdf
Alòs, E., Mazet, O., & Nualart, D. (2001).
Stochastic calculus with respect to Gaussian processes. Annals of
probability, 766-801. https://projecteuclid.org/journals/annals-of-probability/volume-29/issue-2/Stochastic-Calculus-with-Respect-to-Gaussian-Processes/10.1214/aop/1008956692.short
Alòs, E., Mazet, O., & Nualart, D. (2000).
Stochastic calculus with respect to fractional Brownian motion with Hurst
parameter lesser than 1/2. Stochastic processes and their applications, 86(1),
121-139. https://www.sciencedirect.com/science/article/pii/S0304414999000897
Bakry, D., & Mazet, O. (2003). Characterization of Markov semigroups on ℝ associated to some families
of orthogonal polynomials. In Séminaire de Probabilités XXXVII (pp.
60-80). Springer Berlin Heidelberg. https://link.springer.com/chapter/10.1007/978-3-540-40004-2_2
Mazet, O. (2002).
A characterization of Markov property for semigroups with invariant measure. Potential Analysis, 16(3), 279-287. https://link.springer.com/article/10.1023/A:1014027914329
Mazet, O. (1998). Semigroupes de Markov associés à une famille de polynômes
orthogonaux (Doctoral dissertation).
Mazet, O. (1997). Classification des Semi-Groupes de diffusion sur IR associés
à une famille de polynômes orthogonaux. In Séminaire de Probabilités XXXI
(pp. 40-53). Springer Berlin Heidelberg. http://www.numdam.org/item/SPS_1997__31__40_0.pdf
Mazet,
O.
(1996). Une caractérisation des
générateurs de semi-groupes markoviens. Comptes rendus de l'Académie des
sciences. Série 1, Mathématique, 322(2), 165-168.